PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00331
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 1129aa    MW: 125717 Da    PI: 6.836
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00331genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.22.3e-21119220199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++  +W +++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ +l
  PEQU_00331 119 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfsM-QPPA-QELQARDLHDSVWIFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--KDEKHQL 213
                 99*****************************954.4444.49************************************************..6788889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PEQU_00331 214 LLGIRRA 220
                 ***9997 PP

2Auxin_resp120.71.1e-39245328183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  PEQU_00331 245 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKAVYgHQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 328
                 79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-41108248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-38115234IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-17118219No hitNo description
PfamPF023621.6E-19119220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321119221IPR003340B3 DNA binding domain
SMARTSM010196.7E-18119221IPR003340B3 DNA binding domain
PfamPF065073.6E-34245328IPR010525Auxin response factor
PfamPF023097.2E-99931081IPR033389AUX/IAA domain
PROSITE profilePS5174526.6029961080IPR000270PB1 domain
SuperFamilySSF542773.83E-710091075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MRWDAGGERK TINPELWHAC AGPLVTLPPV GSLVAYFPQG HSEQVAASMQ KDIDAHFPNY  60
PNLPSKLICL LHNVTLHVHT ETDEVYAQMT LQPVNSYDEK ALLASDLALK TNKLQTEFFC  120
KTLTASDTST HGGFSVPRRA AEKIFPSLDF SMQPPAQELQ ARDLHDSVWI FRHIYRGQPK  180
RHLLTTGWSL FVSGKRLLAG DSVLFIKDEK HQLLLGIRRA NRQPTNISSS VLSSDSMHIG  240
ILAAAAHAAA NSSPFTIFYN PRASPSEFVI PLAKYNKAVY GHQLSLGMRF RMMFETEESG  300
TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESAPGERR NRVSIWEIEP VAAPFFICPP  360
PFFRTKRPRQ PGMADDETSE METLFKRAMP WLGEEICIKD AQSQNTIMPG LSLAQWMSMQ  420
QNSLLGNSGI QPDYLRSLAP PMIQSLGAAD ISRQLGLQAQ LLPQNNMQFN APRLPQQAQQ  480
VDTLPKIQPP LNQLSSVFQP HQDISMQQRQ QFINQSVSIA QAQTPQQQQP SLLQNNLTQP  540
QVMVQNQIPQ QQSLVPNQHV IQANLVNNHS QQHQQLLMQQ QQQQIQHQNQ QQQQQIQHQN  600
QQQQLNRMTV QVPNQTNQMH LSEHQIQLQI LQKLQQQQQL QQPSLLSQTL LQQAQLPQIQ  660
DQQITILEAA MHPSYSNPSS HLPQSSPPQC GKAAAMNVRV PQSSPLLQQK LQQQQMPLAE  720
LPMGVLPVPS TNVLSTVNLL TAGGTHSMLT DDAPSCSTSP STNNSSILPQ PVISRISHHS  780
MVTTEKSLPS PVTILNPCSL EALPALAKLA KDVPKLEQNV KPSVPISKLQ GQGVAPQVYL  840
NNAAQMDYLD SSSSATSACL SQNDGSLQQN LPLSSFNQPS LFRSTLPDSD VQGTDLRNNN  900
TLFGVNIDVP LGVPLTNDPL LTNSIDSGKF QNQLTGNAIT NYTTSKDAQQ EMSSSMVSQS  960
FGVADVAFNS IDSSLTESSL LNRNSWGPTS QFQRMRTYTK VYKRGAVGRS LDITRYSGYD  1020
ELKRDLARMF SIEGQLEDRQ RIGWKLVYVD HENDVLLVGD DPWEEFVNCV RYIRILSPQE  1080
VQQMSLDGDL GNGLLPNQAC SSSDGGNAWR GQCDQNSGNP STGSYDHLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-167434942388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390465.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLI1GWQ90.0I1GWQ9_BRADI; Auxin response factor
STRINGBRADI1G34340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19